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Computational gene
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#	Item
201	© 1999 Oxford University Press Nucleic Acids Research, 1999, Vol. 27, No[removed]–3910 Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 1999-11-15 15:31:58 Biology Genetics Sequence alignment Multiple sequence alignment Consensus sequence Conserved sequence Nucleic acid sequence Sequence motif Phylo Bioinformatics Computational phylogenetics Science
202	Bioinformatics, Modeling, and Computation 48 SimPheny™: A Computational Infrastructure for Systems Biology Christophe H. Schilling* ([removed]), Sean Kane, Martin Roth, Jin Ruan, Kurt Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:40:41 Genetics Molecular biology Transcription factors Operon Computational biology Gene regulatory network DNA binding site Regulon Genomics Biology Gene expression Bioinformatics
203	Song et al. BMC Bioinformatics 2011, 12(Suppl 1):S45 http://www.biomedcentral.com[removed]S1/S45 RESEARCH Open Access Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2011-10-04 14:29:13 Computational phylogenetics Genetics Molecular genetics DNA Homology Gene duplication Sequence alignment Molecular evolution UCSC Genome Browser Biology Bioinformatics Science
204	New Approaches for High-Throughput Identification and Characterization of Protein Complexes Center for Molecular and Cellular Systems Michelle V. Buchanan H. Steven Wiley, Frank W. Larimer Add to Reading List Source URL: mippi.ornl.gov Language: English - Date: 2007-02-09 12:31:50 Molecular biology Mass spectrometry Bioinformatics Computational biology Mathematical and theoretical biology Peptide Multiprotein complex Gene expression Chemical biology Biology Science Chemistry
205	CAFE: software for Computational Analysis of gene Family Evolution Tijl De Bie, Nello Cristianini, Jeffery P. Demuth, and Matthew W. Hahn January 13, 2006 This document describes how to download and use CAFE. The purpose Add to Reading List Source URL: sites.bio.indiana.edu Language: English - Date: 2009-08-04 21:45:18 Phylogenetics Cross-platform software Phylogenetic tree Java PHYLIP Tar Computing Software Computational phylogenetics
206	NIH Public Access Author Manuscript Pac Symp Biocomput. Author manuscript; available in PMC 2009 October 6. NIH-PA Author Manuscript Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2010-06-12 12:05:34 Molecular evolution Molecular genetics Phylogenetics Evolutionary biology Homology Gene duplication Bioinformatics Evolution by Gene Duplication Evolution Biology Science Computational phylogenetics
207	YEAST Yeast 2000; 16: 177±187. Yeast Functional Analysis Report A web site for the computational analysis of yeast Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-02-15 11:32:18 Transcription factor Ridge Gene Regulatory sequence Bioinformatics DNA-binding domain Regulation of gene expression Transcriptional regulation Sequence motif Biology Gene expression TRANSFAC
208	EPA www.epa.gov MULTIPLEXED GENE EXPRESSION DATA: CELL STRESS INDUCED PROMISCUITY Dayne Filer1, Parth Kothiya1, Ander Wilson1, Matt Martin1, Keith Houck1, David Reif2, Richard Judson1 1 National Center For Computational Add to Reading List Source URL: epa.gov Language: English - Date: 2013-04-10 16:29:25 Scientific method Assay High-throughput screening Multiplex Filter Electronic filter Chemistry Laboratory techniques Science
209	JOURNAL OF COMPUTATIONAL BIOLOGY Volume 17, Number 9, 2010 # Mary Ann Liebert, Inc. Pp. 1227–1242 DOI: [removed]cmb[removed] Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2010-10-11 16:39:18 Molecular evolution Molecular biology Genetics Gene duplication Copy-number variation Subfunctionalization BLAST Bioinformatics Transposable element Biology Molecular genetics Mutation
210	CAFE v3.0 Software for Computational Analysis of gene Family Evolution Mira V. Han, Gregg W.C. Thomas, and Matthew W. Hahn Add to Reading List Source URL: sites.bio.indiana.edu Language: English - Date: 2013-08-12 11:00:06 Test Chmod Scripting languages Poisson processes Computing Find Searching

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